Supplementary document and figures
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ZIP4.0Gene-phenotype relations Visualization of gene-phenotype relations for each of the 4 reference strains and for each of the 5 experiment groups. In total there are 20 figures in this zip file.
HTML-Gene-phenotype relations Visualization of gene-phenotype relations for each of the 4 reference strains and for each of the 5 experiment groups in an HTML format. Because it is more easily browsable than separately analyzing each of the 20 figures.
ZIP2.4Projection plots Visualization of signal intensity ratio of probes that align to small genomic region of KF147 with approximately 20Kb size. Log-scale ratio of signal intensity of aligned probes in a query strain to signal intensity of the same probes in KF147 allows if this region is under-represented (deleted) or over-represented in a query strain. In total there are 9 figures in this Zip file.
HTML-Projection plots Shows projection plots (see previous row) in an HTML page for easier browsing.
ZIP0.1Phenotype clustering 38 Lactococcus lactis strains were hierarchically clustered based on their phenotypes. For each of the 5 experiment groups strains were seperately clustered. However, there was not sufficient experiments in the last category, so no clustering was performed for this category.
HTML-Phenotype clustering Shows phenotype-based clustering of strains (see previous row) in an HTML page for easier browsing.